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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs4820887 chr22:31016914 G/A 2.37E-5 407 16.43 15.4 6.75 KM Plot
HNSC rs4822070 chr22:42352081 A/G 5.5E-5 407 16.37 17.07 9.83 KM Plot
HNSC rs4822472 chr22:24468123 C/A 2.76E-5 412 10.02 14.47 16.4 KM Plot
HNSC rs4839121 chr1:111854096 A/G 2.67E-9 412 3.62 14.58 16.47 KM Plot
HNSC rs487490 chr6:74351097 C/T 2.35E-5 412 17.12 13.12 12.73 KM Plot
HNSC rs490454 chr6:74344064 G/T 2.5E-5 410 17.13 13.1 12.73 KM Plot
HNSC rs493068 chr6:74344332 G/A 3.14E-5 412 17.13 13.1 12.73 KM Plot
HNSC rs494841 chr6:74344499 G/T 3.14E-5 412 17.13 13.1 12.73 KM Plot
HNSC rs4950434 chr1:146913979 G/T 9.67E-7 411 16.87 14.43 3.6 KM Plot
HNSC rs518566 chr6:74356587 C/A 7.76E-5 411 17.12 13.12 12.03 KM Plot
HNSC rs520589 chr6:74345053 C/T 3.14E-5 412 17.13 13.1 12.73 KM Plot
HNSC rs525041 chr6:74345502 C/G 3.14E-5 412 17.13 13.1 12.73 KM Plot
HNSC rs525044 chr6:74345503 T/G 3.14E-5 412 17.13 13.1 12.73 KM Plot
HNSC rs527606 chr6:74346172 A/G 3.14E-5 412 12.73 13.1 17.13 KM Plot
HNSC rs530590 chr1:153151622 G/T 2.66E-8 412 9.4 16.2 16.5 KM Plot